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Survival-associated eQTLs across different cancer types


We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "STAD"
e.g., "rs1824937"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
BRCA rs17788850 chr9:80266045 C/T 1.31E-10 1028 21.17 24.77 6.42 KM Plot
BRCA rs1807510 chr22:28170166 G/T 3.3E-5 1028 13.2 20.43 22.4 KM Plot
BRCA rs1824937 chr5:180317279 G/A 6.3E-7 983 21.67 21.7 19.73 KM Plot
BRCA rs186970928 chr10:70417065 C/G 4.96E-5 1008 23.53 18.83 14 KM Plot
BRCA rs190137591 chr7:54816270 G/A 7.89E-6 1028 21.43 23.83 12.17 KM Plot
BRCA rs191053975 chr10:70417067 A/G 4.96E-5 1008 23.53 18.83 14 KM Plot
BRCA rs200538334 chr7:54838927 GA/G 8.03E-6 1027 21.43 23.83 12.17 KM Plot
BRCA rs200909583 chr7:54806243 G/GCCATCCCATATATTTCA 8.52E-6 1024 21.43 24.9 8.07 KM Plot
BRCA rs201006535 chr10:16613832 AAAAAACAAAAAAAC/A 3.02E-5 1023 22.63 19.17 14.87 KM Plot
BRCA rs201433148 chr2:86511365 CT/GT 2.36E-6 1022 21.95 19.47 12.17 KM Plot
BRCA rs201861004 chr18:44696050 GT/G 5.05E-6 1027 21.7 21.67 18.23 KM Plot
BRCA rs201887179 chr7:54771607 A/AT 7.68E-6 1026 21.43 25.13 3.97 KM Plot
BRCA rs202181746 chr7:54788861 AAC/A 8.46E-6 1026 21.43 26.28 3.97 KM Plot
BRCA rs2080686 chr12:4525646 C/T 2.83E-5 1021 22.77 21.47 14.97 KM Plot
BRCA rs2233823 chr6:43193947 G/A 3.08E-12 1020 21.77 20.48 10.73 KM Plot